STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CitECitrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (291 aa)    
Predicted Functional Partners:
AraD
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.902
PTH_1174
Hypothetical protein; Containing COG5016 and COG0511 domains.
  
  
 0.667
PrpD
Uncharacterized protein; Involved in propionate catabolism.
  
 0.620
PTH_1334
Uncharacterized protein conserved in bacteria.
 
     0.593
MmcB
Fumarase, N-terminal domain; Fumarate hydratase (COG1951), TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
     
 0.536
MmcK
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.533
PrpD-2
Uncharacterized protein involved in propionate catabolism.
 
  
 0.529
SfcA
Malic enzyme.
  
  
 0.522
PTH_1333
Hypothetical protein.
       0.514
Adk
Adenylate kinase and related kinases; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
      0.500
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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