Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XerD-6Site-specific recombinase XerD. (656 aa)    
Predicted Functional Partners:
PTH_1432
Hypothetical protein; Containing partial XerD (COG4974), site-specific recombinase XerD.
 
     0.946
PTH_1434
Uncharacterized protein; Containing TOPRIM domain, potential nuclease.
       0.777
PTH_0213
Hypothetical protein; Containing partial XerD (COG4974), site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.775
XerC-2
Integrase; Belongs to the 'phage' integrase family.
  
     0.775
XerC-5
Integrase.
  
     0.775
PTH_2451
Hypothetical integrase; Containing partial XerD (COG4974), site-specific recombinase XerD.
  
     0.775
XerD-7
Site-specific recombinase.
  
     0.775
RfaG-14
Glycosyltransferase.
  
     0.626
PTH_1291
Hypothetical protein.
  
     0.513
PTH_1431
Hypothetical protein; Containing partial ErfK (COG1376), Uncharacterized protein conserved in bacteria.
  
    0.440
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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