Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FlpFlp pilus assembly protein, pilin Flp, pilin Flp. (59 aa)    
Predicted Functional Partners:
CitB-4
Response regulator; Containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
  
 0.968
CpaB
Flp pilus assembly protein CpaB.
 
  
 0.967
TadG
Flp pilus assembly protein TadG.
 
  
 0.936
TadD
Flp pilus assembly protein TadD; Contains TPR repeats.
 
  
 0.935
PulO-2
Prepilin peptidase CpaA; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, prepilin signal peptidase PulO and related peptidases.
 
  
 0.933
VirB11
Type IV secretory pathway, VirB11 components, and related ATPase; Involved in archaeal flagella biosynthesis.
 
  
 0.920
TadC
Flp pilus assembly protein TadC.
 
  
 0.895
TadC-2
Flp pilus assembly protein TadC.
 
  
 0.879
PTH_1454
Uncharacterized conserved protein.
 
     0.829
PTH_1443
Sensor protein DegS and signal transduction histidine kinase; DegS and COG3920.
 
     0.449
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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