Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DppBABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (324 aa)    
Predicted Functional Partners:
DdpA
ABC-type dipeptide transport system, periplasmic component.
 0.999
PTH_1485
ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 0.999
DppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
DdpA-2
ABC-type dipeptide transport system, periplasmic component.
 0.999
CbiO-4
ABC-type cobalt transport system, ATPase component.
 
 0.913
PTH_1478
Predicted membrane protein.
  
 
 0.879
PTH_1484
Formylmethanofuran dehydrogenase subunit E.
 
     0.659
SmtA-2
SAM-dependent methyltransferases.
  
    0.504
HisJ
ABC-type amino acid transport/signal transduction system.
  
  
 0.500
PTH_0142
Hypothetical protein; Containing predicted ATPase (COG3899), FhlA, FOG: GAF domain (COG2203), S_TKc, serine/threonine protein kinases, catalytic domain, His Kinase A (phosphoacceptor), HATPase_c, Histidine kinase-like ATPase, REC, signal receiver domain, and ArcB, FOG: HPt domain (COG2198).
     
 0.498
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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