STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1559Hypothetical membrane protein. (262 aa)    
Predicted Functional Partners:
LolE
ABC-type transport system, involved in lipoprotein release, permeasecomponent.
   
 
 0.865
RpoE-4
DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.787
SalX
ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.750
SalX-2
ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.750
SalX-3
ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.750
PTH_0786
Hypothetical protein; Containing N-acetylmuramoyl-L-alanine amidase region (COG0860 AmiC) and SH3b domain.
   
   0.504
AmiC
N-acetylmuramoyl-L-alanine amidase.
    
   0.481
AmiC-2
N-acetylmuramoyl-L-alanine amidase.
    
   0.481
AmiC-3
N-acetylmuramoyl-L-alanine amidase.
    
   0.481
AmiC-4
N-acetylmuramoyl-L-alanine amidase.
    
   0.481
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.