Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SpmBUncharacterized membrane protein. (180 aa)    
Predicted Functional Partners:
SpmA
Uncharacterized membrane protein; Required for spore maturation.
  
 0.999
PTH_1749
Uncharacterized protein conserved in bacteria.
 
  
 0.688
PTH_1639
Hypothetical protein.
       0.682
SpoIIM
Uncharacterized membrane protein.
  
  
 0.609
PTH_1167
Hypothetical membrane protein.
  
  
 0.608
SpoVR
Uncharacterized conserved protein.
  
  
 0.579
PTH_1642
Hypothetical membrane protein; Containing GIDA domain.
       0.544
PTH_1169
Hypothetical membrane protein.
  
   
 0.506
DacC-2
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.498
DacC-3
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.498
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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