Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FliA-4 | FliA-5 | PTH_1845 | PTH_1846 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.669 |
| FliA-4 | PTH_0185 | PTH_1845 | PTH_0185 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein. | 0.801 |
| FliA-4 | PTH_1168 | PTH_1845 | PTH_1168 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein. | 0.770 |
| FliA-4 | PTH_1228 | PTH_1845 | PTH_1228 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein. | 0.787 |
| FliA-4 | PTH_1229 | PTH_1845 | PTH_1229 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Containing partial FabH (COG0332), 3-oxoacyl-[acyl-carrier-protein]. | 0.796 |
| FliA-4 | PTH_1605 | PTH_1845 | PTH_1605 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.798 |
| FliA-4 | PTH_1840 | PTH_1845 | PTH_1840 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein; Containing GerA domain (pfam03323). | 0.803 |
| FliA-4 | PTH_1844 | PTH_1845 | PTH_1844 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Uncharacterized conserved protein. | 0.895 |
| FliA-4 | PTH_1847 | PTH_1845 | PTH_1847 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | peptidase_U4, Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.847 |
| FliA-4 | SpoIIIAA | PTH_1845 | PTH_1166 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Uncharacterized protein conserved in bacteria. | 0.784 |
| FliA-5 | FliA-4 | PTH_1846 | PTH_1845 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.669 |
| FliA-5 | PTH_0185 | PTH_1846 | PTH_0185 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein. | 0.784 |
| FliA-5 | PTH_1168 | PTH_1846 | PTH_1168 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein. | 0.771 |
| FliA-5 | PTH_1228 | PTH_1846 | PTH_1228 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein. | 0.779 |
| FliA-5 | PTH_1229 | PTH_1846 | PTH_1229 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Containing partial FabH (COG0332), 3-oxoacyl-[acyl-carrier-protein]. | 0.785 |
| FliA-5 | PTH_1605 | PTH_1846 | PTH_1605 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.775 |
| FliA-5 | PTH_1840 | PTH_1846 | PTH_1840 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical membrane protein; Containing GerA domain (pfam03323). | 0.800 |
| FliA-5 | PTH_1844 | PTH_1846 | PTH_1844 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Uncharacterized conserved protein. | 0.869 |
| FliA-5 | PTH_1847 | PTH_1846 | PTH_1847 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | peptidase_U4, Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.934 |
| FliA-5 | SpoIIIAA | PTH_1846 | PTH_1166 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Uncharacterized protein conserved in bacteria. | 0.767 |
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