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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1928Predicted hydrolase; HD superfamily (permuted catalytic motifs). (602 aa)    
Predicted Functional Partners:
PTH_1927
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.992
PTH_1925
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.988
PTH_1923
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.987
PTH_1926
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.972
PTH_1924
Uncharacterized protein; Predicted to be involved in DNA repair.
   
 
 0.943
PTH_1922
Uncharacterized protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
   
 0.881
PTH_0712
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.850
PTH_0714
Hypothetical protein.
  
 
 0.835
PTH_0708
Hypothetical protein; Containing partial COG1604, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
   
 
 0.749
PTH_1921
Uncharacterized protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
   
 0.616
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.