Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1929Hypothetical protein. (128 aa)    
Predicted Functional Partners:
PTH_1930
Hypothetical protein.
       0.789
PTH_1928
Predicted hydrolase; HD superfamily (permuted catalytic motifs).
       0.611
PTH_1927
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
       0.608
PTH_1926
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
       0.600
PTH_1924
Uncharacterized protein; Predicted to be involved in DNA repair.
       0.583
PTH_1931
Hypothetical protein; Containing DNA-binding HTH domain-containing proteins COG2771 CsgD, DNA-binding HTH domain-containing proteins.
       0.576
PTH_1923
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
       0.574
PTH_1925
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
       0.574
PTH_1922
Uncharacterized protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
       0.480
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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