Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PTH_1970Hypothetical protein; Containing partial COG4071, uncharacterized protein conserved in archaea. (223 aa)    
Predicted Functional Partners:
AsnB
Asparagine synthase; Glutamine-hydrolyzing.
 
      0.899
AmiC-4
N-acetylmuramoyl-L-alanine amidase.
 
     0.806
PgpB
Membrane-associated phospholipid phosphatase.
       0.504
PTH_1969
Hypothetical membrane protein.
       0.468
DedA
Uncharacterized membrane-associated protein.
       0.431
PTH_2128
Hypothetical protein.
  
     0.428
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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