STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LdcC-2Arginine/lysine/ornithine decarboxylases. (482 aa)    
Predicted Functional Partners:
SpeB
Arginase/agmatinase/formimionoglutamate hydrolase; Arginase family; Belongs to the arginase family.
 
 
 0.965
SpeE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 0.924
LdcC
Arginine/lysine/ornithine decarboxylases.
  
  
 
0.908
PTH_0944
Uncharacterized conserved protein.
     
  0.900
ArgH
Argininosuccinate lyase.
     
 0.816
PTH_2006
Hypothetical protein.
       0.675
AmiC-5
N-acetylmuramoyl-L-alanine amidase.
       0.675
PTH_1347
Cystathionine beta-lyase family protein; Involved in aluminum resistance.
 
   
 0.661
PTH_2004
Hypothetical protein; Containing AtoS (COG2202), FOG: PAS/PAC domain, PAS domain, GGDEF, Diguanylate-cyclase (DGC) and HDc domain, Metal dependent phosphohydrolases with conserved 'HD' motif.
 
     0.561
PTH_2863
Predicted Fe-S oxidoreductases.
 
     0.519
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.