STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_2017Superfamily II RNA helicase, superfamily II RNA helicase. (514 aa)    
Predicted Functional Partners:
PTH_2016
Hypothetical protein.
     0.992
PTH_2018
Hypothetical protein.
 
     0.724
PTH_0180
Hypothetical protein.
  
     0.553
PTH_1786
Hypothetical signaling protein; Containing forkhead associated domain (FHA) (COG1716).
  
     0.521
PTH_0111
Uncharacterized protein conserved in bacteria.
  
     0.495
PTH_0550
Hypothetical protein.
  
     0.468
PTH_1829
Hypothetical protein.
  
     0.456
PTH_0194
Hypothetical membrane protein.
  
     0.447
PTH_2015
Hypothetical protein.
       0.447
CobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
   
    0.426
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.