Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FliA-6DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family. (256 aa)    
Predicted Functional Partners:
FlgM
Negative regulator of flagellin synthesis; Anti-sigma28 factor.
  
 0.986
FliM
Flagellar motor switch protein.
 
 
 0.961
FlgE
Flagellar hook protein FlgE.
 
  
 0.957
FlgB
Flagellar basal body protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.940
FlhA
Flagellar biosynthesis pathway, component FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.938
CheC
Chemotaxis protein CheC; Inhibitor of MCP methylation.
  
  
 0.933
FlgC
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.918
CheD
Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
  
  
 0.907
CheR
Methylase of chemotaxis methyl-accepting proteins.
  
  
 0.905
FlhF
Flagellar GTP-binding protein.
 
  
 0.905
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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