Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_2189Hypothetical protein. (303 aa)    
Predicted Functional Partners:
PTH_2193
Hypothetical protein; Containing partial COG5410, Uncharacterized protein conserved in bacteria and partial COG5362, Phage-related terminase.
 
     0.831
PblB
Phage-related protein.
 
   
 0.783
PTH_2177
RTX toxins and related Ca2+-binding proteins.
  
     0.773
PTH_1102
Hypothetical protein; Containing fibronectin type 3 domain.
  
     0.758
PTH_0376
Predicted membrane protein.
  
     0.724
DnaC-2
DNA replication protein.
  
     0.723
DnaG-2
DNA primase; Bacterial type.
  
     0.716
DnaB
Replicative DNA helicase.
  
   
 0.695
HipB-2
Predicted transcriptional regulator.
  
     0.683
PTH_0622
Predicted archaeal sugar kinases.
  
     0.626
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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