Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PTH_2228Uncharacterized conserved protein; Belongs to the glycosyl hydrolase 57 family. (536 aa)    
Predicted Functional Partners:
RfaG-13
Glycosyltransferase.
 
  
 0.969
PTH_2227
Uncharacterized protein conserved in bacteria.
 
     0.924
GlgP
Glucan phosphorylase.
    
 0.913
MalQ
4-alpha-glucanotransferase.
     
 0.907
RfaG-16
Glycosyltransferase.
 
 
  
 0.890
RfaG-3
Glycosyltransferase.
 
 
  
 0.888
RfaG-4
Glycosyltransferase.
 
 
  
 0.648
ManB-3
Phosphomannomutase.
 
     0.461
GlpC-4
Fe-S oxidoreductase.
     
 0.432
LldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
       0.409
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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