STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpoE-8DNA-directed RNA polymerase specialized sigma; Belongs to the sigma-70 factor family. (211 aa)    
Predicted Functional Partners:
PTH_2288
Hypothetical protein.
 
     0.935
PTH_0142
Hypothetical protein; Containing predicted ATPase (COG3899), FhlA, FOG: GAF domain (COG2203), S_TKc, serine/threonine protein kinases, catalytic domain, His Kinase A (phosphoacceptor), HATPase_c, Histidine kinase-like ATPase, REC, signal receiver domain, and ArcB, FOG: HPt domain (COG2198).
 
 
0.886
BaeS-4
Signal transduction histidine kinase.
 
 
0.754
AcrA-4
Membrane-fusion protein.
  
   
 0.740
SunT
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
     0.729
SunT-2
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
     0.687
PTH_1102
Hypothetical protein; Containing fibronectin type 3 domain.
  
     0.598
RsbU
Serine phosphatase RsbU; Regulator of sigma subunit.
  
  
 0.587
PTH_1597
Hypothetical protein; Containing COG3852 NtrB, signal transduction histidine kinase and COG3706 PleD, response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 
 0.556
PTH_2287
Hypothetical protein.
       0.551
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.