Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CaiA-9acyl-CoA dehydrogenases. (366 aa)    
Predicted Functional Partners:
FadB
3-hydroxyacyl-CoA dehydrogenase.
 
 0.917
FixB-6
Electron transfer flavoprotein, alpha subunit.
 
 0.898
FixB-4
Electron transfer flavoprotein, alpha subunit.
 
 0.843
FixB
Electron transfer flavoprotein, alpha subunit.
 
 0.840
FixA-5
Electron transfer flavoprotein, beta subunit.
  
 
 0.789
FixB-3
Electron transfer flavoprotein, alpha subunit.
 
 0.773
CaiA-10
acyl-CoA dehydrogenases.
 
    
0.725
PaaJ
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.708
CaiD
enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.691
FixC-6
Dehydrogenases; Flavoproteins.
  
  
 0.674
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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