Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_2484Hypothetical protein; Containing partial SpoVK (COG0464), ATPase of the AAA+ class. (342 aa)    
Predicted Functional Partners:
PTH_2485
Hypothetical membrane protein.
       0.773
DnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.655
Ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.605
PTH_2486
Hypothetical membrane protein.
       0.598
PTH_0650
Hypothetical protein.
   
 0.597
AcuC
Deacetylases; Including yeast histone deacetylase and acetoin utilization protein.
    
 0.589
AcuC-2
Deacetylases; Including yeast histone deacetylase and acetoin utilization protein.
    
 0.589
AcuC-3
Deacetylases; Including yeast histone deacetylase and acetoin utilization protein.
    
 0.589
PTH_1118
Hypothetical protein; Containing WcaA (COG0463), glycosyltransferases involved in cell wall biogenesis and PilF (COG3063), tfp pilus assembly protein PilF.
  
 0.587
PTH_0757
Hypothetical membrane protein; Containing uncharacterized conserved region (COG2456).
  
 0.565
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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