Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
PTH_2565Hypothetical membrane protein. (383 aa)    
Predicted Functional Partners:
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.858
WcaJ
Sugar transferases; Involved in lipopolysaccharide synthesis.
  
 0.802
PTH_2564
Hypothetical membrane protein; Containing partial COG3609, predicted transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain.
       0.773
WcaG
Nucleoside-diphosphate-sugar epimerases.
 
  
 0.695
RfaG-3
Glycosyltransferase.
  
     0.597
WcaG-4
Nucleoside-diphosphate-sugar epimerases.
 
   
 0.512
GlgB
1,4-alpha-glucan branching enzyme.
   
 0.459
PTH_2566
Hypothetical protein.
       0.449
PTH_2567
Phosphohydrolases; HD superfamily.
       0.449
RfaG-8
Glycosyltransferase.
  
     0.446
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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