Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RfaG-14Glycosyltransferase. (394 aa)    
Predicted Functional Partners:
PTH_2570
Hypothetical protein; Containing AslB (COG0641), arylsulfatase regulator (Fe-S oxidoreductase).
 
   
 0.882
XerC-4
Integrase.
  
     0.638
XerC
Integrase.
  
     0.635
PTH_2659
Hypothetical protein; Containing XerD (COG4974), site-specific recombinase XerD.
  
     0.635
XerD-2
Site-specific recombinase XerD.
  
     0.626
XerD-6
Site-specific recombinase XerD.
  
     0.626
PTH_2450
Hypothetical integrase; Containing XerD (COG4974), site-specific recombinase XerD.
  
     0.621
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.567
PTH_0213
Hypothetical protein; Containing partial XerD (COG4974), site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.514
PTH_1432
Hypothetical protein; Containing partial XerD (COG4974), site-specific recombinase XerD.
  
     0.514
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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