Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_2573Containing RfaG (COG0438), glycosyltransferase. (503 aa)    
Predicted Functional Partners:
PTH_2572
Containing COG0438, RfaG, glycosyltransferase.
       0.773
PTH_2570
Hypothetical protein; Containing AslB (COG0641), arylsulfatase regulator (Fe-S oxidoreductase).
 
   
 0.620
RfaG-14
Glycosyltransferase.
 
    
0.499
PTH_2571
Hypothetical protein.
       0.499
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.484
GlgB
1,4-alpha-glucan branching enzyme.
   
 0.459
PTH_2581
Containing COG1215, glycosyltransferases, probably involved in cell wall biogenesis and COG1216, predicted glycosyltransferases domain.
 
  
 0.428
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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