Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LexA | MmcD1 | PTH_1353 | PTH_1358 | SOS-response transcriptional repressors; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.520 |
| LexA | PTH_2667 | PTH_1353 | PTH_2667 | SOS-response transcriptional repressors; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.624 |
| MmcD1 | LexA | PTH_1358 | PTH_1353 | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | SOS-response transcriptional repressors; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.520 |
| MmcD1 | PTH_1123 | PTH_1358 | PTH_1123 | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | Hypothetical protein; Containing COG0863, DNA modification methylase. | 0.434 |
| MmcD1 | PTH_2144 | PTH_1358 | PTH_2144 | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.434 |
| MmcD1 | PTH_2667 | PTH_1358 | PTH_2667 | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.434 |
| PTH_1123 | MmcD1 | PTH_1123 | PTH_1358 | Hypothetical protein; Containing COG0863, DNA modification methylase. | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.434 |
| PTH_1123 | PTH_2667 | PTH_1123 | PTH_2667 | Hypothetical protein; Containing COG0863, DNA modification methylase. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.421 |
| PTH_2144 | MmcD1 | PTH_2144 | PTH_1358 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.434 |
| PTH_2144 | PTH_2667 | PTH_2144 | PTH_2667 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.753 |
| PTH_2667 | LexA | PTH_2667 | PTH_1353 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | SOS-response transcriptional repressors; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.624 |
| PTH_2667 | MmcD1 | PTH_2667 | PTH_1358 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.434 |
| PTH_2667 | PTH_1123 | PTH_2667 | PTH_1123 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | Hypothetical protein; Containing COG0863, DNA modification methylase. | 0.421 |
| PTH_2667 | PTH_2144 | PTH_2667 | PTH_2144 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.753 |
| PTH_2667 | PTH_2668 | PTH_2667 | PTH_2668 | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | Hypothetical protein. | 0.781 |
| PTH_2668 | PTH_2667 | PTH_2668 | PTH_2667 | Hypothetical protein. | DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family. | 0.781 |