Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_2772Hypothetical protein; Containing glycosyl transferases group 1 domain. (386 aa)    
Predicted Functional Partners:
RfaG-16
Glycosyltransferase.
     0.927
PTH_2774
Hypothetical protein.
 
  
 0.825
PTH_1084
Predicted glycosyltransferases.
 
  
 0.647
GlgB
1,4-alpha-glucan branching enzyme.
  
 0.548
PTH_2771
Hypothetical protein.
 
     0.529
PrfB
Protein chain release factor B; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
 
  
   0.511
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.484
PTH_1483
Hypothetical membrane protein; Containing ISOPREN_C2_like domain and SLH, S-layer homology domain.
  
    0.428
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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