Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RfaG-16Glycosyltransferase. (375 aa)    
Predicted Functional Partners:
PTH_2772
Hypothetical protein; Containing glycosyl transferases group 1 domain.
     0.927
PTH_2778
Hypothetical protein; Containing partial WcaK (COG2327), uncharacterized conserved protein.
 
  
 0.902
PTH_2228
Uncharacterized conserved protein; Belongs to the glycosyl hydrolase 57 family.
 
 
  
 0.890
PTH_2774
Hypothetical protein.
 
  
 0.810
PTH_2771
Hypothetical protein.
 
     0.542
PTH_0475
Hypothetical protein.
  
     0.532
WcaG
Nucleoside-diphosphate-sugar epimerases.
 
  
 0.524
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.484
WcaG-4
Nucleoside-diphosphate-sugar epimerases.
 
   
 0.467
GlgB
1,4-alpha-glucan branching enzyme.
   
 0.459
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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