STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NlpD-2Membrane protein; Related to metalloendopeptidases. (294 aa)    
Predicted Functional Partners:
FliY
Flagellum motor switch protein.
   
   0.687
MrcB
Membrane carboxypeptidase; Penicillin-binding protein.
  
   
 0.626
MrcB-2
Membrane carboxypeptidase; Penicillin-binding protein.
  
   
 0.589
Rho
Transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.588
FtsI-2
Cell division protein; FtsI/penicillin-binding protein 2.
  
   
 0.510
PTH_2833
Hypothetical protein.
       0.492
PTH_2836
Hypothetical protein.
       0.447
MipB
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
    0.441
FtsW-3
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
   
 0.420
FtsI-4
Cell division protein FtsI/penicillin-binding protein 2; With 2x PASTA domain.
 
   
 0.412
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.