Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PTH_2860Hypothetical protein; Containing partial COG4235, Cytochrome c biogenesis factor. (196 aa)    
Predicted Functional Partners:
PspA
Suppresse phage shock protein A; (IM30), sigma54-dependent transcription.
 
     0.741
FimT
Tfp pilus assembly protein FimT.
 
    0.619
PTH_2859
Hypothetical protein.
 
     0.582
NlpD-3
Membrane protein; Related to metalloendopeptidases.
       0.540
PTH_2227
Uncharacterized protein conserved in bacteria.
  
     0.515
PTH_2820
Hypothetical membrane protein.
  
     0.458
PTH_0769
Hypothetical membrane protein.
  
     0.438
PTH_0088
Hypothetical protein; Containing LysM domain.
  
     0.431
PTH_1298
Hypothetical membrane protein.
  
     0.411
DnaD
Putative primosome component and related proteins.
  
     0.403
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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