STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH47200.1Lipoprotein, YaeC family. (306 aa)    
Predicted Functional Partners:
SEH47218.1
ABC-type methionine transport system, permease component.
 0.999
SEH47210.1
ABC-type methionine transport system, ATPase component; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
 0.998
SEH78010.1
D-methionine transport system substrate-binding protein.
  
  
  0.893
SEH47191.1
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family.
      0.773
SEH47185.1
Pyridoxamine 5'-phosphate oxidase.
       0.757
SEH91960.1
O-acetylhomoserine sulfhydrylase.
  
    0.659
cysC
Adenylylsulfate kinase /sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.573
SEH47226.1
ABC-type metal ion transport system, substrate-binding protein/surface antigen.
 
    
0.515
SEH89465.1
ferredoxin--NADP+ reductase.
   
    0.482
SEH53435.1
Phosphonate transport system permease protein.
  
  
  0.463
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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