STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH49802.1Alkylhydroperoxidase family enzyme, contains CxxC motif. (183 aa)    
Predicted Functional Partners:
SEH49795.1
Transcriptional regulator, XRE family.
       0.894
SEH49790.1
Acyl-ACP thioesterase.
 
     0.686
SEH62770.1
4-carboxymuconolactone decarboxylase.
    
 0.614
SEH58940.1
3-carboxy-cis,cis-muconate cycloisomerase.
     
 0.558
SEH90770.1
DNA-binding transcriptional regulator, AcrR family; Manually curated.
  
     0.546
SEH60570.1
4-carboxymuconolactone decarboxylase.
    
 0.521
SEH89242.1
4-carboxymuconolactone decarboxylase.
    
 0.521
SEH79838.1
Putative long chain acyl-CoA synthase.
  
   
 0.502
SEH51839.1
Arabinofuranan 3-O-arabinosyltransferase.
  
     0.495
SEH49394.1
Uncharacterized conserved protein, DUF2236 family.
  
     0.485
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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