Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH51234.1 | SEH51237.1 | SAMN04489835_0772 | SAMN04489835_0773 | Undecaprenyl-diphosphatase. | Hypothetical protein. | 0.808 |
SEH51234.1 | SEH51243.1 | SAMN04489835_0772 | SAMN04489835_0774 | Undecaprenyl-diphosphatase. | Arylsulfatase A. | 0.637 |
SEH51234.1 | rpoA | SAMN04489835_0772 | SAMN04489835_5809 | Undecaprenyl-diphosphatase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.474 |
SEH51234.1 | rpoB | SAMN04489835_0772 | SAMN04489835_0051 | Undecaprenyl-diphosphatase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.436 |
SEH51234.1 | rpoZ | SAMN04489835_0772 | SAMN04489835_4513 | Undecaprenyl-diphosphatase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.746 |
SEH51237.1 | SEH51234.1 | SAMN04489835_0773 | SAMN04489835_0772 | Hypothetical protein. | Undecaprenyl-diphosphatase. | 0.808 |
SEH51237.1 | SEH51243.1 | SAMN04489835_0773 | SAMN04489835_0774 | Hypothetical protein. | Arylsulfatase A. | 0.758 |
SEH51237.1 | SEH51248.1 | SAMN04489835_0773 | SAMN04489835_0775 | Hypothetical protein. | LPS sulfotransferase NodH; Catalyzes the sulfuryl group transfer from 3'- phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S). | 0.423 |
SEH51237.1 | SEH61254.1 | SAMN04489835_0773 | SAMN04489835_2020 | Hypothetical protein. | cob(II)yrinic acid a,c-diamide reductase. | 0.582 |
SEH51243.1 | SEH51234.1 | SAMN04489835_0774 | SAMN04489835_0772 | Arylsulfatase A. | Undecaprenyl-diphosphatase. | 0.637 |
SEH51243.1 | SEH51237.1 | SAMN04489835_0774 | SAMN04489835_0773 | Arylsulfatase A. | Hypothetical protein. | 0.758 |
SEH51243.1 | SEH51248.1 | SAMN04489835_0774 | SAMN04489835_0775 | Arylsulfatase A. | LPS sulfotransferase NodH; Catalyzes the sulfuryl group transfer from 3'- phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S). | 0.949 |
SEH51243.1 | SEH55862.1 | SAMN04489835_0774 | SAMN04489835_1413 | Arylsulfatase A. | Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. | 0.932 |
SEH51243.1 | SEH61254.1 | SAMN04489835_0774 | SAMN04489835_2020 | Arylsulfatase A. | cob(II)yrinic acid a,c-diamide reductase. | 0.582 |
SEH51243.1 | SEH91639.1 | SAMN04489835_0774 | SAMN04489835_5656 | Arylsulfatase A. | Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family. | 0.604 |
SEH51243.1 | egtB | SAMN04489835_0774 | SAMN04489835_1864 | Arylsulfatase A. | iron(II)-dependent oxidoreductase; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family. | 0.743 |
SEH51243.1 | rpoA | SAMN04489835_0774 | SAMN04489835_5809 | Arylsulfatase A. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.708 |
SEH51243.1 | rpoB | SAMN04489835_0774 | SAMN04489835_0051 | Arylsulfatase A. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.605 |
SEH51243.1 | rpoZ | SAMN04489835_0774 | SAMN04489835_4513 | Arylsulfatase A. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.701 |
SEH51248.1 | SEH51237.1 | SAMN04489835_0775 | SAMN04489835_0773 | LPS sulfotransferase NodH; Catalyzes the sulfuryl group transfer from 3'- phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S). | Hypothetical protein. | 0.423 |
page 1 of 2