STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH52852.1Glutamine cyclotransferase. (269 aa)    
Predicted Functional Partners:
SEH52844.1
Tocopherol cyclase.
 
     0.689
SEH52840.1
NADH dehydrogenase, FAD-containing subunit.
       0.648
SEH52855.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family.
       0.608
SEH49951.1
Hypothetical protein.
    
   0.588
SEH53284.1
Glycolate oxidase.
    
   0.588
SEH53726.1
FAD/FMN-containing dehydrogenase.
    
   0.588
SEH57724.1
decaprenylphospho-beta-D-ribofuranose 2-oxidase.
    
   0.588
SEH59564.1
FAD/FMN-containing dehydrogenase; Manually curated.
    
   0.588
SEH69633.1
FAD/FMN-containing dehydrogenase.
    
   0.588
SEH69732.1
Glycolate oxidase.
    
   0.588
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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