STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH55153.1Hypothetical protein. (140 aa)    
Predicted Functional Partners:
SEH55145.1
Hypothetical protein.
       0.739
SEH55161.1
Hypothetical protein.
       0.693
SEH65911.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.504
SEH49257.1
Cytochrome c-type biogenesis protein.
   
    0.480
SEH54988.1
Cytochrome c biogenesis protein CcdA.
   
    0.480
SEH75190.1
Hypothetical protein.
  
    0.465
SEH75729.1
Hypothetical protein.
  
    0.445
SEH55172.1
Copper-binding protein CopC (methionine-rich); Manually curated.
       0.442
SEH69707.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
    0.437
SEH85912.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
    0.437
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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