STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH56171.1Uncharacterized conserved protein, DUF427 family. (270 aa)    
Predicted Functional Partners:
SEH56180.1
Acyl-CoA dehydrogenase.
       0.757
SEH74608.1
Protein of unknown function.
       0.582
SEH91613.1
Regulatory protein, tetR family.
       0.582
SEH56189.1
Hypothetical protein.
       0.505
SEH46596.1
Uncharacterized alpha/beta hydrolase domain.
  
     0.500
SEH56292.1
2-haloacid dehalogenase.
  
     0.483
SEH67501.1
40-residue YVTN family beta-propeller repeat-containing protein.
      
 0.429
SEH91600.1
Ferredoxin-NADP reductase.
    
  0.412
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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