STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH57137.1Putative Ca2+/H+ antiporter, TMEM165/GDT1 family. (235 aa)    
Predicted Functional Partners:
SEH57147.1
Hypothetical protein.
       0.564
SEH89267.1
H+-transporting ATPase.
  
 
 
 0.540
SEH77458.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
     
 0.484
SEH75920.1
Hypothetical protein.
      
 0.478
SEH64454.1
Cation-transporting ATPase E.
    
 
 0.477
SEH74408.1
Energy-coupling factor transport system permease protein.
 
     0.419
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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