STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH58000.13-hydroxyisobutyrate dehydrogenase. (285 aa)    
Predicted Functional Partners:
SEH58008.1
3-hydroxyisobutyrate dehydrogenase.
 
    
0.821
SEH58724.1
3-hydroxyisobutyrate dehydrogenase.
  
     0.761
SEH92959.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
     0.726
SEH58020.1
Hypothetical protein.
       0.572
SEH57992.1
DNA-binding transcriptional regulator, HxlR family.
       0.552
SEH73221.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.527
SEH50538.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
  0.524
SEH85527.1
2-keto-3-deoxy-L-rhamnonate aldolase RhmA; Belongs to the HpcH/HpaI aldolase family.
  
 
  0.422
SEH46381.1
Alcohol dehydrogenase, class IV.
 
  
 0.419
SEH51731.1
Acyl transferase domain-containing protein.
    
  0.416
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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