STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH60483.1Hypothetical protein. (86 aa)    
Predicted Functional Partners:
SEH60493.1
Helicase/secretion neighborhood TadE-like protein.
 
     0.913
SEH60457.1
Tight adherence protein B.
  
  
 0.906
SEH60447.1
Pilus assembly protein CpaF.
  
  
 0.898
SEH60467.1
Type II secretion system (T2SS), protein F.
  
  
 0.857
SEH65803.1
Flp pilus assembly protein CpaB.
 
  
 0.815
SEH89101.1
PAS domain S-box-containing protein.
 
    0.786
SEH52650.1
PAS domain S-box-containing protein.
  
    0.745
SEH60474.1
Protein of unknown function.
  
    0.711
SEH60434.1
Helicase/secretion neighborhood CpaE-like protein.
 
     0.706
SEH67484.1
Histidine kinase-like ATPase domain-containing protein.
   
    0.568
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.