STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH60585.1Hypothetical protein. (326 aa)    
Predicted Functional Partners:
SEH60609.1
Hypothetical protein.
      
0.782
SEH60570.1
4-carboxymuconolactone decarboxylase.
  
    0.778
SEH60566.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.773
SEH60593.1
Hypothetical protein.
      
0.773
SEH60602.1
Hypothetical protein.
      
0.773
SEH60621.1
Hypothetical protein; Non-canonical start codon; manually curated.
       0.701
SEH60626.1
UDP-galactose 4-epimerase.
       0.701
SEH49234.1
Hypothetical protein.
  
 0.621
SEH60652.1
Non-ribosomal peptide synthetase terminal domain of unknown function.
       0.615
SEH60638.1
Hypothetical protein.
       0.614
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.