STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH62102.1Probable F420-dependent oxidoreductase, Rv2161c family. (292 aa)    
Predicted Functional Partners:
SEH62117.1
Hypothetical protein.
 
   
 0.934
SEH62111.1
Acetyl-CoA acetyltransferase.
 
     0.929
SEH62091.1
SnoaL-like domain-containing protein.
 
     0.928
SEH62125.1
Probable F420-dependent oxidoreductase, Rv3520c family.
 
     0.863
SEH62107.1
acetyl-CoA C-acetyltransferase.
 
     0.862
SEH61907.1
Hypothetical protein.
  
     0.684
SEH61898.1
Uncharacterized OB-fold protein, contains Zn-ribbon domain.
  
     0.642
SEH61741.1
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
  
     0.625
SEH62676.1
Steroid delta-isomerase.
  
     0.608
SEH62061.1
3-ketosteroid 9alpha-monooxygenase subunit A.
  
     0.596
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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