STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH63413.1Conserved hypothetical protein, steroid delta-isomerase-related. (152 aa)    
Predicted Functional Partners:
SEH63404.1
Glyoxylase, beta-lactamase superfamily II; Manually curated.
 
  
  0.880
SEH84449.1
Carboxymethylenebutenolidase.
  
  
  0.844
SEH63438.1
Protein of unknown function.
       0.689
SEH63448.1
DNA-binding transcriptional regulator, AcrR family.
       0.495
SEH77725.1
SnoaL-like domain-containing protein.
  
     0.432
SEH63453.1
Phytoene dehydrogenase-related protein.
       0.407
SEH63080.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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