STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH63585.1Allantoin racemase. (238 aa)    
Predicted Functional Partners:
SEH63575.1
Nucleobase:cation symporter-1, NCS1 family.
 
     0.957
SEH63595.1
Putative urate catabolism protein.
 
  
  0.929
SEH60707.1
OHCU decarboxylase.
 
  
  0.901
SEH63567.1
DNA-binding transcriptional regulator, GntR family.
 
     0.762
SEH63556.1
F420-dependent oxidoreductase, MSMEG_4879 family.
       0.563
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
    
  0.539
SEH63547.1
Polyketide cyclase / dehydrase and lipid transport.
       0.475
SEH56939.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
    
  0.421
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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