STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH70343.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
SEH70361.1
Signal transduction histidine kinase.
  
    0.765
SEH47976.1
Hypothetical protein.
    
   0.733
SEH50431.1
Phage-related minor tail protein.
    
   0.733
SEH51036.1
Hypothetical protein.
    
   0.733
SEH51042.1
Hypothetical protein.
    
   0.733
SEH60402.1
Hypothetical protein.
    
   0.733
SEH77534.1
Hypothetical protein; Manually curated.
    
   0.733
SEH84035.1
LysM domain-containing protein.
    
   0.733
SEH92073.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
    
   0.733
SEH70353.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
    0.721
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.