STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH76469.1Osmoprotectant transport system permease protein. (256 aa)    
Predicted Functional Partners:
SEH76477.1
Osmoprotectant transport system substrate-binding protein.
 
 0.999
SEH76464.1
Osmoprotectant transport system ATP-binding protein.
 0.993
SEH59096.1
Osmoprotectant transport system substrate-binding protein.
 
 0.988
SEH59104.1
Osmoprotectant transport system ATP-binding protein.
 0.970
SEH76457.1
Osmoprotectant transport system permease protein.
  
 
0.937
SEH69585.1
Glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
 
 0.827
SEH59116.1
Osmoprotectant transport system permease protein.
  
  
 
0.731
SEH76484.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
       0.588
SEH76451.1
Taurine dioxygenase.
       0.542
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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