STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH86219.1DNA-binding transcriptional regulator, AcrR family. (429 aa)    
Predicted Functional Partners:
SEH86184.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
 
     0.820
SEH77521.1
Predicted ATPase.
  
     0.734
SEH82751.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.730
SEH86166.1
Short-chain dehydrogenase.
 
     0.701
SEH71580.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.700
SEH72195.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.687
SEH85613.1
Phosphotransferase enzyme family protein.
  
     0.662
SEH72212.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
     0.641
SEH72170.1
Ferredoxin.
  
     0.619
SEH76612.1
Ecdysteroid kinase.
  
     0.603
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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