STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH91244.1rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (451 aa)    
Predicted Functional Partners:
SEH91248.1
Phosphoheptose isomerase.
  
 0.997
SEH91260.1
Histidinol-phosphate phosphatase family domain-containing protein/HAD-superfamily hydrolase, subfamily IIIA.
  
 0.980
SEH91255.1
ADP-heptose:LPS heptosyltransferase.
 
  
 0.970
SEH91228.1
ADP-heptose:LPS heptosyltransferase.
 
  
 0.968
SEH91233.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     0.959
SEH91270.1
Carbamoyltransferase.
 
   
 0.927
SEH91275.1
dTDP-glucose 4,6-dehydratase.
 
 
 0.855
SEH91295.1
Glycosyl transferases group 1.
 
  
 0.827
SEH91221.1
UDPglucose 6-dehydrogenase.
 
   
 0.786
SEH91287.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.744
Your Current Organism:
Mycolicibacterium rutilum
NCBI taxonomy Id: 370526
Other names: CIP 109271, DSM 45405, JCM 16371, M. rutilum, Mycobacterium rutilum, Mycobacterium rutilum Hennessee et al. 2009, Mycobacterium sp. czh-107, Mycobacterium sp. czh-117, Mycobacterium sp. czh-132, Mycolicibacterium rutilum (Hennessee et al. 2009) Gupta et al. 2018, strain czh-117
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