STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHJ55418.1Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
KHJ55417.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.980
KHJ55416.1
Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  0.970
KHJ55419.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.964
KHJ54407.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.917
KHJ55588.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.915
KHJ53458.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.910
KHJ53690.1
Glycerol-3-phosphate transporter permease; With UgpEC is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.908
ugpC
Hypothetical protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
  
  0.888
KHJ53456.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
  0.884
KHJ54403.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
  0.875
Your Current Organism:
Aureimonas altamirensis
NCBI taxonomy Id: 370622
Other names: A. altamirensis, Aurantimonas altamirensis, Aurantimonas altamirensis Jurado et al. 2006, Aureimonas altamirensis (Jurado et al. 2006) Rathsack et al. 2011, CECT 7138, CIP 109525, DSM 21988, KCTC 22106, LMG 23375, LMG:23375, NBRC 107774, NCIMB 14392, strain S21B
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