STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG51775.1DNA-binding transcriptional regulator, AcrR family. (213 aa)    
Predicted Functional Partners:
SDG51708.1
Amidase.
 
     0.874
SDG51811.1
Glutamate or tyrosine decarboxylase.
 
     0.807
SDG51742.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
 
     0.732
SDG51859.1
Hypothetical protein.
       0.678
SDG90571.1
Helicase/secretion neighborhood TadE-like protein.
  
     0.586
SDG86332.1
Purine catabolism regulatory protein.
  
     0.530
SDG51899.1
Protein of unknown function.
       0.510
SDG59997.1
Pyranose oxidase.
  
 
  0.497
SDH08484.1
Phytoene/squalene synthetase.
  
  
  0.473
SDG43481.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.406
Your Current Organism:
Microbacterium pygmaeum
NCBI taxonomy Id: 370764
Other names: DSM 23142, JCM 15925, M. pygmaeum, Microbacterium pygmaeum Kageyama et al. 2008, Microbacterium sp. KV-490, NBRC 101800, NRRL B-24469, strain KV-490
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.