STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG55087.1Nitroreductase. (193 aa)    
Predicted Functional Partners:
SDG72436.1
uroporphyrinogen-III C-methyltransferase.
    
 0.743
SDG38628.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
 
 0.674
SDH40166.1
FMN adenylyltransferase /riboflavin kinase; Belongs to the ribF family.
    
 0.660
SDG88269.1
Adenylyltransferase and sulfurtransferase.
    
 0.637
SDH25008.1
Ribonuclease HI.
    
  0.631
SDG69353.1
FMN reductase.
     
 0.596
SDH38653.1
FMN reductase.
     
 0.596
SDG95891.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.577
SDH64159.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.543
ribA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
   
 
 0.529
Your Current Organism:
Microbacterium pygmaeum
NCBI taxonomy Id: 370764
Other names: DSM 23142, JCM 15925, M. pygmaeum, Microbacterium pygmaeum Kageyama et al. 2008, Microbacterium sp. KV-490, NBRC 101800, NRRL B-24469, strain KV-490
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