STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG57159.1MFS transporter, CP family, cyanate transporter. (384 aa)    
Predicted Functional Partners:
SDH42069.1
Hypothetical protein; Belongs to the UPF0246 family.
   
    0.722
SDG57204.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
       0.586
SDG57241.1
Catechol 2,3-dioxygenase.
       0.464
SDG57276.1
4-oxalomesaconate tautomerase.
       0.464
SDH44907.1
MFS transporter, DHA1 family, arabinose polymer transporter.
  
     0.440
SDG57327.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase.
       0.424
SDG57365.1
4-oxalomesaconate hydratase.
       0.424
Your Current Organism:
Microbacterium pygmaeum
NCBI taxonomy Id: 370764
Other names: DSM 23142, JCM 15925, M. pygmaeum, Microbacterium pygmaeum Kageyama et al. 2008, Microbacterium sp. KV-490, NBRC 101800, NRRL B-24469, strain KV-490
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.