STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG65648.1Homodimeric dihydroxyacetone kinase. (576 aa)    
Predicted Functional Partners:
SDG65586.1
Triosephosphate isomerase.
 
 
 0.964
SDG65621.1
Ribose 5-phosphate isomerase B.
 
  
 0.936
SDG65549.1
Sugar phosphate isomerase/epimerase.
 
     0.898
SDH51502.1
Glycerol-3-phosphate dehydrogenase.
 
  
 0.897
SDG65516.1
NAD binding domain of 6-phosphogluconate dehydrogenase.
 
     0.892
SDG65400.1
DNA-binding transcriptional regulator LsrR, DeoR family.
  
  0.885
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.872
SDG65688.1
Nitrate/nitrite transporter NarK.
 
     0.869
SDH45442.1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.801
SDG65464.1
Hypothetical protein.
 
     0.758
Your Current Organism:
Microbacterium pygmaeum
NCBI taxonomy Id: 370764
Other names: DSM 23142, JCM 15925, M. pygmaeum, Microbacterium pygmaeum Kageyama et al. 2008, Microbacterium sp. KV-490, NBRC 101800, NRRL B-24469, strain KV-490
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.