STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH55222.1acyl-CoA dehydrogenase. (410 aa)    
Predicted Functional Partners:
SDH55184.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
  0.995
SDH26362.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.919
SDG63582.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.853
SDH55146.1
acyl-CoA thioester hydrolase.
 
  
  0.799
SDH26401.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.728
SDH29748.1
3-methylcrotonyl-CoA carboxylase beta subunit.
 
 
 0.720
SDG62172.1
enoyl-CoA hydratase.
   
 0.719
SDG84428.1
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.719
SDH12323.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.713
SDG43867.1
long-chain-acyl-CoA dehydrogenase.
  
  
 
0.705
Your Current Organism:
Microbacterium pygmaeum
NCBI taxonomy Id: 370764
Other names: DSM 23142, JCM 15925, M. pygmaeum, Microbacterium pygmaeum Kageyama et al. 2008, Microbacterium sp. KV-490, NBRC 101800, NRRL B-24469, strain KV-490
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