STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g25550DBnaA07g25550D protein. (189 aa)    
Predicted Functional Partners:
BnaC01g39710D
BnaC01g39710D protein.
   
 0.996
BnaC05g44220D
BnaC05g44220D protein.
   
 0.996
BnaA05g29900D
BnaA05g29900D protein.
   
 0.996
BnaA08g30610D
BnaA08g30610D protein.
   
 0.996
BnaA09g04700D
BnaA09g04700D protein.
   
 0.994
BnaC05g01900D
BnaC05g01900D protein.
   
 0.992
BnaC01g28510D
BnaC01g28510D protein.
   
 0.992
BnaA09g38540D
BnaA09g38540D protein.
   
 0.992
BnaCnng31490D
BnaCnng31490D protein.
   
 0.992
BnaA09g53310D
BnaA09g53310D protein.
   
 0.992
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.